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Porcine Respiratory Diseases: How to Collect the PCR and ELISA Panel

01.10.2026 10:00:00

Porcine Respiratory Diseases: How to Collect the PCR and ELISA Panel

The coughing and feeding is rarely caused by a single agent. Porcine respiratory pathology is formed by viruses and bacteria at once, so a set of tests is collected to be the age of the group and the task: to remove the outbreak or to monitor the herd. We're looking at what samples are informative for each agent, which shows PCR and ELISA separately and how we don't take the punctual antibodies for infection.

Respiratory complex: Why are you looking for multiple agents?

A pig with a cough and some respirators around it.

Pig respiratory pathology is described as a respiratory complex (porcine respiratorial disuse complex, PRDC). It's polymicrobial: the disease arises from different combinations of primary and secondary agents. The Opriesnig and co-authors review included the Pig Respiratory Syndrome Virus (RRS), pig influenza virus, Type 2 swine circulatory virus (PCB-2), Mycoplasma hyopneumoniae and Pasteurella multitocida.

Combinations change the severity of the disease. According to the same survey, co-infection between CBS-2 and M. Hyopneumoniae, which is separately low-pathogenic, causes severe respiratory disease.

The clinical picture doesn't breed these infections. The management of the World Organisation for Animal Health (WOAH), WOAH, clearly says that pig flu is indistinguishable by signs from RFDS, Auresca's disease, pork respiratory coronavirus, actinobacillosis pheurropneumonia and mycoplasmosis, so laboratory research is needed. So the practical conclusion is, a panel, not one test.

Age tells us who to look for first.

Three pigs of different ages: sucking, trimming and feeding

The group's age narrows down the list. In a 2021 study, tracheobronchial swine swine was swabbed with signs of respiratory disease in the households of Belgium and the Netherlands. Proportion of positive in M. Hyopneumoniae grew up with age: 8.5 per cent in 3–5 weeks, 16.2 per cent in 6–11 weeks and 53.4 per cent on board.

AgeWhich was found more frequently (% of positive samples)
3-5 weeksInfluenza A virus: 28.4%, pig cytomegalovyrus: 18.2%, A. pleuropneumoniae: 24,7%, PRRSV-1: 11,5%
6 - 11 weeksA. Pleuropneumoniae: 32.1%, pig cytomegalovyrus: 26.7%, PRRSV-1: 25.5%, influenza A: 20.5%, CBS-2: 11.4%
FeedingM. hyopneumoniae: 53,4%

The most common pairs in one sample were RPTC and Micoplasmosis, RPTC and flu, RPTC and FMC-2, Micoplasmosis and influenza. Of the triple combinations, the GFMV + M prevailed. Hyopneumoniae + influenza A virus, as well as RPTC + M. Hyopneumoniae + CBS-2. This is a specific study, not a standard, but it's logical: before they leave, they test viruses first, and when they feed, they start with mycoplasmosis.

Flash or monitoring: two different panels

The task defines both material and method.

FlashMonitoring the herd
Who are being exploredclinically ill and fallen animalsplanned sample by age group
Sample typeLungs, almonds, lymph nodes, blood, lower respiratory swabsserum, oral fluid, tracheal swabs, meat juice
MethodPCR for the driverELISA on antibodies plus PCR randomly
What do you get?confirmation of caseSeroprophylaxis and age of infection

Serology in an acute situation helps the weak: antibodies appear later on. The PCR is also limited in routine surveillance: it only catches the driver at the moment of release.

Mycoplasma hyopneumoniae: Where to look for DNA

Scheme of trachea and pork lungs with swabs taken from the respiratory tract

The Micoplasma colonizes the resynthetic epithelial trachea and bronchus, and the material is taken closer to the infection site. "Best" does not mean "sensitive". According to the data cited by Oh and co-authors, at an early date the larynx swabs studied by PCR are higher than both nose swabs and tracheobronchial lava. Suckers will have their larynx swabs used to assess whether a sow's agent is being transferred.

To oversee, the tracheal samples are combined into pools. According to the 2024 estimates, PCR sensitivity was 0.96 for a pool of three samples, 0.95 for a pool of five and 0.93 for a pool of ten. Pulling reduces the cost of research, and it remains the main constraint on oversight programmes.

The serology complements the PCR, but answers another question as to whether the group met with the agent.

Actinobacillus pleuropneumoniae: almonds, lungs and serotype

Almonds and lungs as PCR material and ELISA serotype tablet

Material depends on who's being investigated. The fallen animals are taken from the affected lung tissue, almonds, bronchial and amphibian lymph nodes. The living are swabbed with mucous mouths and amydalins. By recruitment description PCR-APP-FAKTOR, a healthy animal bacterion-drive agent is separated from the almonds for 3 to 4 months after recovery.

There are 19 serotypes for surface carbohydrates, especially the capsule. Serotypes 1, 5, 9, 11 and 16 are classified as the most virulent due to toxins ApxI and AppxII. The serotype is important for the selection of a bacterial vaccine. Due to cross-sectional reactions and low reproducibility of serological methods, the serotype is determined molecularly.

The herd's serology shows another way to see if there was any contact. In an experiment with pigs infected with serotypes 1 and 7, antibodies to the lipopolisaharide were detected from the 14th to the 56th days, while the answer to ApxIV's toxin was delayed by another 14 to 21 days. This should be taken into account when choosing the time for selection of the serum.

RPTC: PCR from fallen and herd seroprofessions

Blood and serum screenings for PCRs and IFAs under RFCS

The respiratory form of the RRT is manifested by breathing, fever, denial of feed and fragrance. Young pigs are sicker; The infection often occurs sub-clinically in the cartilage and uninhabited sows.

According to the WOAH, after infection there is viremia and lung infection: young pigs have them for weeks, adults for days. So the best way to detect a virus is with serum and broncholalves. PCR applies to tissue and serum; In the case of rounding, oral fluid is suitable and in tribal herds it is appropriate to process fluids: excruciate tissue collected during castration and tail buying. Important restriction: The PCR does not distinguish the infectious virus from the activated virus.

The antibodies to the RRTS virus are detected from 7–14 days after infection, peaking at 30–50 days, and some pigs become seroneative 3–6 months later. A single serum sample is therefore not very informative: the results are influenced by maternal antibodies and past vaccinations. Maternal antibodies have a half-life of 12 to 14 days and are usually detected up to 4 to 8 weeks after birth. Seropositive sows in the infected environment are serum-converted from 3 to 6 weeks. To show a fresh infection, two samples are examined: acute serum and reconcentrated.

Suspicion procedure is set Veterinary rules for RFMOsapproved by Order No. 625 of the Ministry of Agriculture of Russia of 26 October 2020. They are in operation until 1 September 2032.

  1. The owner shall, within 24 hours, report the suspicion to an official of a regional veterinary authority or its subordinate organization (para. 10 of Regulation No. 625).
  2. Samples are selected by group size: up to 50 heads from 15 pigs, at 51–100 from 22; at 101–500 from 25; at 501 and over 30. 16).
  3. Living high-temperature pigs take 3 to 5 ml of blood. The corpses (not more than three) are taken from spleen and lung fragments of 5–10 g, embroidered from the chest, and amputated lymph nodes. Aborted fruit is sent in its entirety (para. 16).
  4. The accompanying letter indicates the date of the last vaccination, the number of the series and the manufacturer of the vaccine (para. 17).
  5. Research is carried out on the release of the virus in cell culture, PCR and ELISA. 19).

Diagnosis is considered to be established if the agent has been identified, its genetic material has been detected or antibodies have been found that are not related to vaccination (p. 18). The latter clause determines the value of vaccination information in an accompanying letter.

Gripp A and CBS-2: narrow window and DNA quantity

24 - 72 hours clock and real-time PCR curve

У гриппа окно для ПЦР короткое. Признаки и выделение вируса с носовой слизью начинаются уже через сутки после заражения, а выделение обычно прекращается к 7–10-м суткам. Руководство ВОЗЖ рекомендует отбирать пробы в течение 24–72 часов после появления признаков и брать материал от нелеченого животного в острой фазе. РНК ищут в трахее, лёгких и носовых мазках. Пробы везут охлаждёнными на льду, не замораживая. Заболеть при гриппе способно всё поголовье группы, смертность обычно низкая, но вторичные бактерии утяжеляют картину.

The flu serology answers the question about past contact. Historically, the main test was RTGA on steam serums taken from 10 to 21 days apart; The rise of the titre four times and more indicates a recent infection.

With CBS-2, the other is complex: the virus is widespread, and the fact that it's discovered means little. The value is the number. In experimental work, high viremia was regarded as 7 log10 copies of the genome per millilitre of serum and above. System disease was confirmed by a combination of three conditions. One: loss of mass. Second: Moderate or expressed lymphoid depletion with granulematose inflammation of lymphoid tissue. Third: Moderate or high amount of nucleic acid CBS-2 in these hybridized in situ tissues. Therefore, positive PCRs in CEF-2 are read together with clinical painting and pathomorphology.

Aureski disease: gE-ELISA separates infection from vaccination

ELISA tablet: the inoculated animal has no antibodies to gE; the infected person has them.

Свиньи, перенёсшие болезнь Ауески, остаются латентно инфицированными; исключение составляют поросята младше двух недель, которые гибнут от энцефалита. Латентных и субклинически заражённых животных выявляют серологией, а не выделением возбудителя. Антитела появляются на 7–10-е сутки после заражения.

Marked vaccines are free of one glycoroteine, most often gE. The inoculated non-infected animal does not give antibodies to gE, but the infected one does. This is the basis for the DIVA principle. The level of punctual immunity is assessed by other tests: gB-ELISA, latex agglutination or neutralization of the virus. A real-time PCR has also been developed, distinguishing gE-deployed vaccine virus from the wild genes gB and gE.

Veterinary rules for the illness of Aureskiapproved by Order No. 540 of the Ministry of Rural Affairs of Russia on 14 September 2020, is valid until 1 March 2027. Living animals take flushes from mouth and nose, 5 ml of blood with anticoagulant, and 5 ml without it. 18). The corpses are taken from fragments of parenchimatose organs and (or) brains in 5–10 g, and (or) lymph nodes in their entirety, and (or) almonds (p. 18). Samples shall be delivered to the laboratory within 12 hours of selection (p. 19).

Diagnosis is established in one of the five cases (p. 21). An agent has been identified or its genetic material has been discovered that is not related to vaccine strains. The results of the biotest are positive. They found antibodies that aren't vaccine-related. Finally, antibodies to glycorothein gE were found in animals who had been vaccinated with a marked vaccine. The latter case is important for practice: the positive gE-ELISA in the inoculated herd is a basis for diagnosis rather than a punctual trail.

Secondary bacteria: pasteurellosis and bordetals

Pasteurella multitocida and Bordetella bronchiptica are more likely to be the second layer, with already damaged mucus. The PCR finds them fast, but there's not enough PCR to diagnose.

Veterinary rules for pasteurella, утверждённые приказом Минсельхоза России от 31.10.2022 № 770, действуют с 1 марта 2023 года до 1 марта 2029 года. Диагноз считают установленным, если возбудитель выделен и идентифицирован (п. 21). Методы: бактериологическое исследование либо ПЦР с определением патогенности возбудителя биологической пробой (п. 20). От животных берут 2–5 мл крови и слизь из носовой полости; патматериал отбирают, если с момента гибели прошло не более 5 часов (п. 18). Пробы доставляют в течение 24 часов (п. 19).

How not to take the punctual antibodies for infection?

The herd's serology is read only with the vaccination scheme. Four practical rules:

  • Aueski's disease. При маркированных вакцинах без gE используют gE-ИФА как DIVA-тест; для оценки иммунитета берут gB-ИФА или нейтрализацию.
  • RPTC. ELISA doesn't share vaccine and field antibodies. A new infection shows seroconversion in steam samples and confirms the PCR.
  • Gripp A. A single positive result only indicates contact with the virus or vaccine. The recent infection shows a four-fold increase in titre at the PTGA on paired serums.
  • Plorropneumonia. Serotype specific tests and the AppxIV test provide different information; The timing of the serum selection shall be consistent with the date of suspected contamination.

Inoculation information is not a formality: Regulation No. 625 refers to it in the accompanying letter for samples (para. 17) and the lab relies on them to interpret the result.

Samples and deliveries: what the veterinary rules require

Ice thermos and clocks: 12, 24 and 48 hours to deliver samples

Delivery times vary by disease, and this tends to fail.

Disease (document)Main samples in suspicionDate of delivery to the laboratory
RPTC (Order No. 625)Blood from the living 3 - 5 ml; spleen and lungs 5 - 10 g, exhumed chest cavity, amplified lymph nodes from corpses48 hours (p. 17)
Aueski disease (Order No. 540)Washing from mouth and nose, blood 5 ml with anticoagulant and 5 ml without it12 hours (p. 19)
Pasteurelles (Order No. 770)Blood 2 - 5 ml, mucus from the nasal cavity; Painting takes no later than 5 hours after death24 hours 19)

The general requirements are the same: the samples shall be cooled, the containers sealed in ice or chiller thermos for the duration of carriage. In order to release the RRT virus, the WWS management recommends that the material be cooled to 4°C immediately after selection and delivered within 24 - 48 hours.

FACTOR NET kits for the diagnosis of respiratory diseases of pigs

PCR in real time:

  • PCR-MYCOPLASMOSIS-HYOP-FAKTOR (cat. No. D52725-VET: DNA M. hyopneumoniae. Material: tracheobronchial swabs, bronchalveolar lava, lung tissue, and early lubricant, almonds, rotor throats and bows.
  • PCR-APP-FAKTOR (cat. No. D18919-VET: DNA A. pleuropneumoniae. Material: swabs with mucous rot throats and almonds, pulmonary tissue, almonds, bronchial and medial lymph nodes.
  • PCR-PRRS-FAKTOR (cat. No. R13117-VET): RNA of the RRTS virus. Material: Plasma and serum, fragments of tissue and organs, sperm, placenta and fruit sheaths from abortioned animals.
  • PCR-CIRCOVIRUS-2-FAKTOR (cat. No. D13017-VET: DNA of CBS-2. Material: blood serum, feces, sperm, aborted fruit, placenta, organs of fallen animals.
  • PCR-INFLUENZA-A-FAKTOR (cat. No. R10515-VET): RNA influenza A. Material: swabs with mucous throat and trachea, internal body fragments and other sample descriptions of the set.
  • PCR-AUJESZKY-DIFF-FAKTOR (cat. No. D54026-VET: DNA of the Aureski virus, distinguishing between marked (gE-delected) vaccine strains.
  • PCR-PASTEURELLOSIS-FAKTOR (cat. No. D19319-VET) and PCR-BORDETELLOSIS-FAKTOR (cat. D15618-VET: DNA P. Multicida and B. bronchiseptica.

ELISA ID.vet:

For nucleic acid extraction before PCR: DNA/RNA-S-FAKTOR (cat. № EDR001-VET).

VET FAKTOR specialists can help select kits for your laboratory’s needs and equipment: +7 (495) 789-48-11, vet@faktor.ru.

Frequently asked questions

What kind of living material do you use for mycoplasmosis?

The agent colonizes the resynthetic epithelial trachea and bronchus, so he takes breather samples. According to the data cited by Oh and co-authors, early exposure to lubricant is higher than that of PCR and nose swabs, and tracheobronchial lava.

Can samples be combined into pools?

For tracheal samples on M. Hyopneumoniae's bullet was studied. The calculated response was 0.96 for a pool of three samples, 0.95 for a pool of five, 0.93 for a pool of ten. Bullets reduce the cost of supervision, although sensitivity is a little lower.

Can positive gE-ELISA in inoculated pigs be a trace of the vaccine?

Not if a marked vaccine without gE was used. Cf. 21 of Regulation No. 540 detection of antibodies to glycoroteine gE in animals infected with a marked vaccine is one of the reasons for considering that the diagnosis of Auresca's disease has been established.

How long after the cough shows up, do you want to take a flu sample?

According to the WOAH, samples are taken within 24 - 72 hours of the appearance of signs from an untreated animal in acute phase. The virus is usually stopped by the 7th to 10th days, and later PCR may be negative if the infection is actually carried out.

Is PCR enough to diagnose pasteurelles?

Nope. Cf. 21. Regulation No. 770 is considered to have been established if the driver has been isolated and identified. PCR under art. 20 are applied together with the determination of the pathogenicity of the agent by biological sample.

Sources

This material is for reference only and does not replace veterinary rules or a veterinary professional’s assessment. Diagnosis is established on the basis of laboratory findings in accordance with the procedure prescribed by law.


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